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| Registros recuperados: 96 | |
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| Le Boucher, Richard; Vandeputte, Marc; Dupont-nivet, Mathilde; Quillet, Edwige; Mazurais, David; Robin, Jean; Vergnet, Alain; Medale, Francoise; Kaushik, Sadasivam; Chatain, Beatrice. |
| This preliminary study assessed genotype x diet interaction in late growth of European sea bass (Dicentrarchus labrax) fed with either a fish meal (FM)- or a fish oil (FO)-based diet (M) or an all-plant-based (PB) diet. A total of 550 fish from 224 families were reared together and tagged. DNA was sampled and microsatellites were used to assign parentage. When fish weight was 192 +/- 54 g, two tanks were fed with M (FM: 100%; FO: 100%) and two others with PB (FM: 0% and FO: 0%). Body weight (BW), fork length (FL) and fillet lipid content (CorrFat) were analysed with a linear model and with REML methodology. We observed no significant differences between groups, but a slightly lower (P=0.03) daily growth coefficient in sea bass fed PB than in those fed M.... |
| Tipo: Text |
Palavras-chave: Genotype by diet x environment interaction; European sea bass; Plant diet; Genetic correlation. |
| Ano: 2011 |
URL: http://archimer.ifremer.fr/doc/00032/14335/12374.pdf |
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| Le Boucher, Richard; Vandeputte, Marc; Dupont Nivet, Mathilde; Quillet, Edwige; Mazurais, David; Robin, Jean; Vergnet, Alain; Medale, Francoise; Kaushik, Sadasivam; Chatain, Beatrice. |
| Tipo: Text |
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| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/00038/14907/12233.pdf |
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| Palaiokostas, Christos; Bekaert, Michael; Taggart, John B.; Gharbi, Karim; Mcandrew, Brendan J.; Chatain, Beatrice; Penman, David J.; Vandeputte, Marc. |
| Background: European sea bass (Dicentrarchus labrax) is one of the most important farmed species in Mediterranean aquaculture. The observed sexual growth and maturity dimorphism in favour of females adds value towards deciphering the sex determination system of this species. Current knowledge indicates the existence of a polygenic sex determining determination system that interacts with temperature. This was explored by restriction-site associated DNA (RAD) marker analysis in a test panel of 175 offspring that originated from a factorial cross between two dams and four sires from a single full-sib family. Results: The first high-density single nucleotide polymorphism (SNP) based linkage map for sea bass was constructed, consisting of 6706 SNPs on 24... |
| Tipo: Text |
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| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00280/39095/37658.pdf |
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| Vandeputte, Marc; Dupont Nivet, M; Chavanne, H; Chatain, Beatrice. |
| Polygenic sex determination, although suspected in several species, is thought to be evolutionarily unstable and has been proven in very few cases. In the European sea bass, temperature is known to influence the sex ratio. We set up a factorial mating, producing 5.893 individuals from 253 full-sib families, all reared in a single batch to avoid any between-families environmental effects. The proportion of females in the offspring was 18.3%, with a large variation between families. Interpreting sex as a threshold trait, the heritability estimate was 0.62 +/- 0.12. The observed distribution of family sex ratios was in accordance with a polygenic model or with a four-sex-factors system with environmental variance and could not be explained by any genetic... |
| Tipo: Text |
Palavras-chave: Dicentrarchus labrax; Fish; Growth; Heritability; Sex ratio. |
| Ano: 2007 |
URL: http://archimer.ifremer.fr/doc/2007/publication-3526.pdf |
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| Haffray, Pierrick; Enez, Florian; Bugeon, Jerome; Chapuis, Herve; Dupont-nivet, Mathilde; Chatain, Beatrice; Vandeputte, Marc. |
| Marker-based parentage assignment provides the opportunity to investigate factors of efficiency for mixed-family designs and factorial mating. In such designs, family size is both uncontrolled and small, which may be thought to limit the accuracy of estimated breeding values (EBVs). The objective of this work was to estimate the accuracy of EBVs of growth and quality traits in a large factorial mating design and in commercial breeding conditions. An expected six hundred full-sib families of rainbow trout Oncorhynchus mykiss (2042 fish in total) were produced by ten factorial matings of six dams with ten sires. Fish were phenotyped for body weight, carcass yield, fillet yield, fillet fat content and fillet colour, and family information was recovered using... |
| Tipo: Text |
Palavras-chave: Aquaculture; Salmonids; DNA parentage assignment; Sib selection; EBV accuracy. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00429/54062/55395.pdf |
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| De Verdal, Hugues; O'Connell, Catherine Maeve; Mekkawy, Wagdy; Vandeputte, Marc; Chatain, Beatrice; Bégout, Marie-laure; Benzie, John A.h.. |
| Given the strong effects of behavioural hierarchies on growth in many cultured species and the key role of feed efficiency in aquaculture economics, understanding the nature of the interaction of these variables is important for the sustainability of aquaculture. The relationship between agonistic behaviour, growth and feed efficiency in Nile tilapia, Oreochromis niloticus, was studied by rearing 120 fish in eight aquaria. Fish were video-recorded to estimate the occurrence of agonistic behaviour during a fasting and a refeeding period. Growth, feed intake and feed conversion efficiency (FCE - calculated as the inverse of feed conversion ratio (FCR)) were subsequently measured individually for each fish. Fish showed 58% less agonistic traits during the... |
| Tipo: Text |
Palavras-chave: Agonstic behaviour; Feed efficiency; Nile tilapia; Performances; Correlation. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00483/59495/62363.pdf |
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| Le Boucher, Richard; Dupont-nivet, M.; Laureau, S.; Labbe, Laurent; Geurden, I.; Medale, F.; Chatain, Beatrice; Vandeputte, Marc; Quillet, E.. |
| World fish farm production is growing rapidly. However, the supply of fishmeal and fish oil, the major ingredients of fish diets, has reached a limit because of the limits in the exploitation of wild fish stocks that cannot be increased to meet a growing demand. The main response, especially in Europe, has been the progressive replacement of fishmeal and fish oil by plant products. However, the strong reduction of growth and sometimes survival of fish fed highly substituted diets has urged research on the genetic potential for adaptation to plant-based diets. Recent results clearly demonstrate that fish can be selected for their capacity to grow when fed plant-based diets, even though the underlying mechanisms remain unknown. Genotype-diet interactions... |
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| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00200/31167/29566.pdf |
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| Vandeputte, Marc. |
| In studies on parentage assignment with both parents unknown, the exclusion power of a marker set is generally computed under the hypothesis that the potential families tested are independent and unrelated samples. This tends to produce overly optimistic exclusion power estimates. In this work, we have developed a new formula that gives almost unbiased results at the population level. |
| Tipo: Text |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00117/22804/20610.pdf |
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| Griot, Ronan; Allal, Francois; Brard‐fudulea, S; Morvezen, R; Haffray, P; Phocas, F; Vandeputte, Marc. |
| In the context of parentage assignment using genomic markers, key issues are genotyping errors and an absence of parent genotypes because of sampling, traceability or genotyping problems. Most likelihood‐based parentage assignment software programs require a priori estimates of genotyping errors and the proportion of missing parents to set up meaningful assignment decision rules. We present here the R package APIS, which can assign offspring to their parents without any prior information other than the offspring and parental genotypes, and a user‐defined, acceptable error rate among assigned offspring. Assignment decision rules use the distributions of average Mendelian transmission probabilities, which enable estimates of the proportion of offspring with... |
| Tipo: Text |
Palavras-chave: Microsatellites; Missing parents; Parentage assignment; Pedigree; SNP. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00587/69866/67767.pdf |
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| Vandeputte, Marc. |
| AQUAEXCEL2020 is a H2020 infrastructure project coordinated by the Institut National de la Recherche Agronomique (INRA), France, with 22 partners from 10 countries, combining 39 research infrastructures. The project follows-up the AQUAEXCEL project (2011-2015), started in October 2015 and will finish in September 2020. |
| Tipo: Text |
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| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00307/41793/41001.pdf |
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| Vandeputte, Marc; Quillet, Edwige; Chatain, Beatrice. |
| Sex ratios in farmed European sea bass are highly biased towards males (75 to 95%), which is problematic for aquaculture. In this mini-review, we re-analyse fisheries literature data about sex ratios in wild sea bass from 13 population samples, representing altogether 4889 individuals covering the major part of the distribution range of the species. We find that as a whole, the sex ratio of wild populations is biased towards females (59.4% females, p < 0.001), but that the sex ratio of the younger fish (< 30 cm total length) is balanced (52.0% females, p = 0.15), while the sex ratio of the older fish is heavily biased towards females (69.5% females, p < 0.01). Possible causes of these differences (differential longevity, biased sampling) are... |
| Tipo: Text |
Palavras-chave: Sex ratio; Genetics; Sex determination; Fish aquaculture; Dicentrarchus labrax. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00078/18882/16450.pdf |
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| Le Boucher, Richard; Quillet, Edwige; Vandeputte, Marc; Lecalvez, Jean Michel; Goardon, Lionel; Chatain, Beatrice; Medale, Francoise; Dupont Nivet, Mathilde. |
| Facing the finite size of fisheries resources, the important increase of aquaculture production during the last decades has led to the evolution of feed composition with an increasing substitution of fish meal and fish oil with terrestrial plant products. During the same period, selective breeding has been developed in fish and major improvements were achieved on growth, resulting in 4 to 20 % gain per fish generation (Olesen, Gjedrem, Bentsen et al. (2003); Chevassus, Quillet, Krieg et al. (2004)), and also on health and flesh quality traits. |
| Tipo: Text |
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| Ano: 2010 |
URL: http://archimer.ifremer.fr/doc/00038/14908/12234.pdf |
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| Rodde, Charles; Chatain, Beatrice; Vandeputte, Marc; Quoc Trinh, Trong; Benzie, John A.h.; De Verdal, Hugues. |
| Feed conversion ratio (FCR), the ratio between feed intake and body weight gain, is of major interest for improving aquaculture sustainability through reduced feed costs and environmental impacts. Demonstrating whether FCR measured in juvenile fish is an accurate predictor of their performance during the whole rearing period is critical to developing genetic improvement programs for this trait. This is especially true for estimates obtained in individually reared fish, for which this has high implications regarding the size of the necessary rearing structures. We obtained individual FCR from 30 male Nile tilapia Oreochromis niloticus from the GIFT strain individually reared in a recirculating system, from 36 to 260 g mean weight. They were fed twice a day... |
| Tipo: Text |
Palavras-chave: Feed efficiency; GIFT tilapia; Individual rearing; Selective breeding. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00630/74175/73757.pdf |
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| Vandeputte, Marc; Bestin, Anastasia; Fauchet, Louarn; Allamellou, Jean-michel; Bosc, Stéphane; Menchi, Olivier; Haffray, Pierrick. |
| Parentage assignment with genomic markers provides an opportunity to monitor salmon restocking programs. Most of the time, it is used to study the fate of hatchery-born fish in those programs, as well as the genetic impacts of restocking. In such analyses, only fish that are assigned to their parents are considered. In the Garonne-Dordogne river basin in France, native salmon have disappeared, and supportive breeding is being used to try to reinstate a self-sustained population. It is therefore of primary importance to assess the numbers of wild-born returning salmon, which could appear as wrongly assigned or not assigned, depending on the power of the marker set and on the size of the mating plan. We used the genotypes at nine microsatellites of the 5800... |
| Tipo: Text |
Palavras-chave: Parentage assignment; Restocking; Fisheries. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00688/79973/82916.pdf |
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| Registros recuperados: 96 | |
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